Tangled Bank – Table of Contents Alert
A New Issue of the Tangled Bank has been made available:
27 July 2005; Vol 1, No. 33
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IN THIS ISSUE
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Submissions to this issue of the Tangled Bank come from the physical sciences, biological sciences, biomedical sciences, and other related fields. They have been organized, for your convenience, according to research areas.
Journey Through TimePat Hayes at
Red State RabblePat Hayes goes to the Grand Canyon and uses the evidence he finds there to refute creationist claims.
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COMMENTARIES
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What’s the Deal With Fluoride?Steve Pavlina at
Steve Pavlina’s Personal Development BlogA critical look at fluoride in your drinking water. The author questions the use of fluoride, much like Gen. Ripper speaking to Mandrake in Dr. Strangelove, and comes to the conclusion that the addition of fluoride to water supplies does more harm than good.
Systems Biology – Biology of the Future or Newest Fad?Alex Palazzo at
The Mad ScientistBiologists have an inferiority complex, or so the author claims. They look up at physicists with envy as studies of atom smashing and telescopes garner attention from the popular press, while insights into cell division only see publication in scientific journals. What’s a poor biologist to do other than go interdisciplinary and create Big Biology?
Dr. E. Fuller Torrey, M.D., WankerHeinrich Gompf at
She Flies With Her Own WingsA U.S. Congressman attempted to de-fund an NIH grant because he does not believe that the National Institute of Mental Health should support research on pigeons. Dr. Torrey’s Wall Street Journal op-ed inspired this defense of studying neurobiology and behavior in model organisms and the peer-review process in general.
Go PracticalAdam Ierymenko at
Grey ThumbThe author presents an alternative approach to going after anti-evolution groups. He suggests that instead of debating creationists, scientists should take advantage of what evolution does for the non-scientists. One such approach is to market technologies that take advantage of evolutionary theory as such.
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PROFILE
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Super-Adequate Structural Homologies, or The Ornithorynchus ShuffleScott Eric Kaufman at
AcephalousCharles Darwin was not the only person writing about evolution in the nineteenth century; he simply had the best mechanism – natural selection – for the evolutionary process. Inspired by a recent review of a book about another book published prior to
On the Origin of Species, the author compares Robert Chambers’s
Vestiges of the Natural History of Creation with Darwin’s more legendary work.
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Astronomy
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Deep Impact (Live): Much Cooler Than a Mediocre BlockbusterMillagan at
EGADAn astronomer’s play-by-play account of the Deep Impact probe’s collision with the comet Tempel 1. He provides images of what happened along with descriptions of what to look for in those images.
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Physics and Chemistry
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Two cheers for string theorySean Carroll at
Cosmic VarianceA physicist, “who is not personally identified as a string theorist,” gives us some insight into an often misunderstood realm of physics. We learn that string theory explains quantum gravity better than any other approach. The author proceeds to defend the theory explaining that it does have applications despite what some critics claim.
Moral RelativityMatt at
Pooflingers AnonymousEinstein came up with the theory of general relativity (E=mc
2) and was the first person to relate the energy and mass of an object in a simple equation. The author offers a similar equation for moral relativity complete with a derivation and application.
Not All Things FreezeJeff Shaumeyer at
BearcastleSpurred by an offhand remark in a book, the author questions the idea that “all things freeze when they get cold enough.” The discussion centers on helium, the only element that will not freeze under its own vapor pressure, and the physical characteristics of the different states of matter.
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Geology
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Dynamic ForcesRock of Ages
Pat Hayes at
Red State RabbleA journey through the Grand Canyon reveals insights into the formation of rock strata and how geologists use inference to reconstruct earth history.
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Cellular and Developmental Biology
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The History of Tubulin DetyrosinationAlex Palazzo at
The Mad ScientistDiscoveries over thirty years ago revealed that the alpha-tubulin protein is modified in nerve cells. The author discusses the history of these discoveries as well as how they were interpreted and future directions in tubulin modification research.
Development, medicine, and evolution of the neck and shoulderPZ Myers at
PharyngulaThe development of neck and shoulder bones has confused biologists long after they solved the major developmental patterns in the hindbrain and spine. A new study uses transgenic mice to follow the fate of neural crest and mesodermal cells in order to unravel the mystery. The findings also shed light on a bone that has gone missing in most tetrapods, but is found in fish.
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Ecology
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More Pelican PuzzlementMike at
10,000 BirdsOne of the nation’s largest American White Pelican nesting colonies is losing members and at a rapid pace. This piece explores a few possible hypotheses, but none of them can explain the phenomenon. Maybe there’s too much fluoride in their drinking water.
Close EncountersPamela Martin at
Thomasburg WalksThe author writes about an encounter with a deer and a fawn when visiting a region near Thomasburg, Ontario. This particular encounter may explain previous observations of deer in the wild.
Formicidae Imports: The Argentine AntChris at
Organic MatterThe common, household ant found throughout the southern United States is actually an invasive species from Argentina. Eradicating this invader has been problematic as different environmental factors exist in the native and ancestral populations.
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Evolution
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Ancestral MagnitudesDarkSyde at
Unscrewing The InscrutableThe author intertwines genealogy with evolution to determine how many grandparents it takes to get from humans to different human ancestors, such as early primates, primitive mammals and early vertebrates. The article attempts to trace human ancestry back to the beginnings of the universe.
The Genotype and the Phenotype and How to Measure DivergenceRPM at
evolgenWhile calculating percent divergence from molecular data is a fairly straightforward procedure, morphological measurements are tainted with subjectivity. The author argues that comparing sequence level estimates of divergence to phenotypic estimates can only lead to faulty conclusions about the relative roles protein sequences and regulatory elements play in anatomical evolution.
Sleeping the summer away 2: converging in on an epiphragmAydin Örstan at
Snail’s TalesTwo distantly related families of snails close their apertures with calcareous epiphragms, whereas close relatives of these families have a membrane-like epiphragm. The article describes these physiological differences in snails, and the author argues that they arose independently via convergent evolution in the two taxa.
Information From Randomness?Jim Clark at
JC’s BlogIn Richard Dawkins’s
The Blind Watchmaker the author uses a computer algorithm to change a random string of letters into a predetermined sentence by selecting for letters that match the target string. This article argues that Dawkins’s “Weasel” algorithm does not accurately simulate the origin of information from a zero information state.
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Neuroscience
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BlinkAndrew at
Universal AcidA recent study on how your brain processes images while you blink leads to this discussion of how the human brain interprets visual input.
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Immunology and Medicine
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Infectious Disease GeneticsHsien-Hsien Lei at
Genetics and Public Health BlogDespite improvements in disease prevention and treatment, many people still die from infections. An epidemiologist suggests that new developments in the field of pathogenomics will provide the next step forward in combating infectious disease.
BacteriophagesAndrew MacGinnitie at
Dr. AndyIn the earliest days of anti-microbial treatments, some researchers tried developing bacteriophages to combat infections. These attempts went by the wayside with the advent of penicillin and other antibiotics. With the increase of antibiotic resistance amongst virulent strains of bacteria, researchers are once again turning to phages to treat bacterial infections.
Dealing with conflictOrac at
Respectful InsolenceDr. John Ioannidis, M.D. recently examined high profile, highly cited medical trials and their follow-up studies and determined that at least 1/3 of the original publications were refuted by subsequent papers. Orac explains what this means for medical research and how to interpret the results in the light of alternative medicine.
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Applied Biological Sciences
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Rediscovering NatureIronman at
Political CalculationsCar designers at DaimlerChrysler turn to the sea with their newest concept car. Using the boxfish body plan as guidance, they came up with a vehicle that had low drag coefficient and a lightweight yet sturdy structure.
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Agricultural and Plant Biology
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Science can be tasty!Kitty O’Neil at
Science and SarcasmNew potatoes are young tubers that are not fully mature. The author describes the differences between these and regular potatoes, and why she enjoys them as a summertime delicacy.
The Poetry of LeavesNuthatch at
Bootstrap AnalysisA look at how leaves are arranged on a stem. A mathematical view of leaf arrangements focusing on similarities and patterns found amongst different plant taxa, and why they are arranged that way.
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Anthropology
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Human Habitation of the CanyonPat Hayes at
Red State RabbleThe earliest human settlers in the Grand Canyon arrived over ten thousand years ago. The author explores some of the evidence for these humans on the walls of the canyon.
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Education
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The Wizarding Apprentices' Surprising DiscoveryGrrlScientist at
Living the Scientific LifeA university instructor deals with scheduling an exam that conflicts with the release of the newest
Harry Potter book, only to discover that the lecture professor is also a
Harry Potter fan.
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Errata
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Hybrid vs. Hybrid and how the Times gets it wrongJoel Shurkin at
…Of Cabbages and KingsThe
New York Times recently ran a front page article on hybrid cars in which they claim hybrids “improve performance but don’t save gasoline.” The author takes umbrage at this claim, arguing that pure hybrids do, in fact, improve gas mileage, and the Times did not consider pure hybrids in their article.
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Creek Running North on 10 August 2005. The editors invite you to submit your entry directly to
host@tangledbank.net or
pzmyers@pharyngula.org.
